I am running some PC games on my arcade tower and the other day, seemingly out of the blue, the music in a couple of the games was all... different

The best example I can give you is the game Shotgun Ninja.
Here's a youtube video of it being played with the music in the background how it is supposed to sound:
And this is how it sounds on my PC:
The weirdest thing about this is that I made an intro video for this game for my frontend that used to play the soundtrack the way it was meant to sound, and now even that video is missing the low-end audio channel at the beginning of the tune. I start playing and there's literally no music until about 15 seconds in, where some sparse sounds from the soundtrack... kind of "leak" through the speakers.
TL:DR - Game used to play with a full-sounding soundtrack, now only plays a fraction of the sounds it used to.