Well, a search of MAWS.com revealed 187 games in MAME that use "stick" as a control. Most of the ones I had heard of, Red Baron, Afterburner, Space Harrier, etc., do, in fact, use an analog joystick. The few yoke games were in this category as well (Star Wars, Stun Runner, etc.) and would play just fine with a stick, unless your're a purist. Of the ones I'd never heard of, they seem mostly to be flight combat games. Whether that is enough to justify the price (and perhaps the real estate on your control panel) is up to you.
Of course, just about every PC flight sim ever made would use an analog stick, if you want those, too...