I just ordered 2 9 pin headers and 36 female connectors (twice as many as needed, just in case) and I am going to try and hunt down some wire that matches up with the MKII service manual. Thanks for all the help, I'll post up when it all comes in and I put it all together, in the mean time I'm still open to any further advice. ordered from jammaboards.com was about $11 shipped, not bad at all (I'd have preferred a premade wire, but beggars cant be choosers)
BOBA:awesome link, if I wasnt out of paperand ink on my printer I'd print out all 79 pages