I have something similar happening on my Ikari Warriors machine (not MAME, actual hardware), and obviously the Williams dollar slot thing doesn't explain this one. Coin slot 1 gives 1 credit per coin like it should, while coin slot 2 gives 6 (!) credits per coin. I could fix it by wiring the slot 2 coin switch in parallel with the slot 1 coin switch, but I'm kind of curious what the problem is.