Sorry just got back to this. It's not a system that originally had a trackball. It's a Sinistar cabinet that has been Jamma-ized, and currently has a 60-1 iCade in it. The iCade can take the trackball in over joystick port 2, which is the way it's wired. I was just hoping to take the 60-1 out, plug the JPac in, and be done, but of course it's not quite that simple (never is, is it?)
Anyway, I do have another solution. I will put in a 6 wire trackball connector inline, and just disconnect that and plug it into a trackball-usb converter right there.
If you did want to add that functionality and want me to test it I'd be happy to do that.