looks like they changed the program a little bit. I have an old v2.something i use at work...it's options are a little different. I should probably update it.

i loaded up the new software at home but I don't have the old software at home i can copy to tell you but from my best recollection...
first before i start copying it asks "allocate drive slack to partition" i say no just leave it empty.
then it asks a weird question at the end after coping along the lines of "did you want adjust this disk to have better support" (something like that) I say yes to this question because it fixes the MBR on the new drive to match the action of the old drive but fixed for the geometry of the new drive. it's phrased really weird cause the guy is german...I can't blame him.
EDIT WHILE I WAS TYPING
Which program did you end up using? Clonezilla?