There's a dozen ways to go about this, but I think the easiest solution is to just use smaller buttons. There's a few different kinds at radio shack, and there are 24mm buttons from Sanwa and Seimitsu.
Alternatively you could just use one button and have the other play use a shift function. So player 2 would have to hold press Fire1 + credit in order to get a credit for player 2.
OR you could put your credit buttons on the side of your CP. I've seen that work for some people.