I second the primer remark.
I used spray paint for my final coat, and I would get these wrinkles in areas that were not WELL primed.
Actually, I would get these wrinkles if I didn't prime AND apply a coat of roll on paint. Or if I sanded too much before spraying.
Also, be sure your not using water based primer and oil based spray paint. That could have been causing it for me as well. I never did get to the bottom of why this was happening to me, but I found a formula that worked. 2 coats of primer, 1 coat of roll on, then spray, sanding in between each.