Another thing: From what I currently understand, the IPAC only has PROM for its perminant config storage. This means it can only be programed once. If you played around with Winpac and clicked program, then that is the only perminent (I suck at spelling late at night) settings for it. The IPAC can always be reprogrammed on a boot by boot measure (stored on the IPAC ram). If I remember correctly, there is a way to automate the process upon booting, ive just never played with the IPAC programming, I will just adjust MAME for it. To be honest, this is because I dont want to commit to a PROM relationship right now, and have to pay alimony later down the road if I made a mistake.
EDIT: According to others, I am wrong about the PROM of the IPAC (Apparently it is either EEPROM or FLASH). In that case ignore most of my above message. I think I got a mixed message from Andi's site at one point where it mentioned PROM (or maybe a post here) and assumed that PROM was being used.