OK
I adjusted the screen resolution in stella to match my screen resolution in Mala and now it work
Except that stella is now not fullscreen
I've tried Multisync
still nothing
any Idea of how to get a larger version of stella without losing my layout in Mala?
I had the same problem with Stella -- Don't know if you've tried this or not, but it worked for me...
MaLa > GUI > Game Start/Quit > Reorder layout after game quit <--- Should be enabled (checked)
** Edit **
I just checked my config and realized I have res set in the Stella cmd line which would affect the display, NOT reordering as mentioned above (I think...)
My cmd in MaLa has -fullscreen 1 -fullres 1024x768 -video gl
I'm using an LCD with MaLa at 1024 so I had to set the res of Stella at 1024 to fix the layout shifting problem.