Firstly I would like to say thank you to UncleT for creating such a thorough setup guide for Mala.

I started setting up Mala last night and created all of the folders as suggested by UncleT as shown below:
DIRECTORY STRUCTURE:
The following is the format which I used to keep everything organized. Create the following folders:
Create main folders:
"C:\Emulators\"
"C:\vpinball\"
"C:\FuturePinball\"
Create the MALA install folder and sub-folders:
"C:\Emulators\Mala\"
"C:\Emulators\Mala\layouts\"
"C:\Emulators\Mala\layouts\Mame\"
"C:\Emulators\Mala\layouts\3DO\"
"C:\Emulators\Mala\layouts\Adventure Vision\"
"C:\Emulators\Mala\layouts\Arcadia\"
"C:\Emulators\Mala\layouts\Astrocade\"
"C:\Emulators\Mala\layouts\Atari 2600 (z26)\"
"C:\Emulators\Mala\layouts\Atari 2600 (stella)\"
"C:\Emulators\Mala\layouts\Atari 5200 (jum52)\"
"C:\Emulators\Mala\layouts\Atari 5200 (atari800WinPlus)\"
"C:\Emulators\Mala\layouts\Atari 7800\"
"C:\Emulators\Mala\layouts\Atari 800XL\"
"C:\Emulators\Mala\layouts\Atari Jaguar\"
"C:\Emulators\Mala\layouts\Atari Lynx\"
"C:\Emulators\Mala\layouts\Channel F\"
"C:\Emulators\Mala\layouts\Colecovision\"
"C:\Emulators\Mala\layouts\Commodore Amiga\"
"C:\Emulators\Mala\layouts\Daphne\"
"C:\Emulators\Mala\layouts\Future Pinball\"
"C:\Emulators\Mala\layouts\Gameboy\"
"C:\Emulators\Mala\layouts\Gameboy Color\"
"C:\Emulators\Mala\layouts\Gameboy Advance\"
"C:\Emulators\Mala\layouts\Intellivision\"
"C:\Emulators\Mala\layouts\Neo Geo Pocket Mono\"
"C:\Emulators\Mala\layouts\Neo Geo Pocket Color\"
"C:\Emulators\Mala\layouts\Nintendo\"
"C:\Emulators\Mala\layouts\Nintendo64\"
"C:\Emulators\Mala\layouts\Odyssey2\"
"C:\Emulators\Mala\layouts\Passigar Scumm\"
"C:\Emulators\Mala\layouts\Sega 32x\"
"C:\Emulators\Mala\layouts\Sega CD\"
"C:\Emulators\Mala\layouts\Sega Dreamcast\"
"C:\Emulators\Mala\layouts\Sega Gamegear\"
"C:\Emulators\Mala\layouts\Sega Genesis\"
"C:\Emulators\Mala\layouts\Sega Master System\"
"C:\Emulators\Mala\layouts\Sega SC3000\"
"C:\Emulators\Mala\layouts\Sega SG1000\"
"C:\Emulators\Mala\layouts\Super Nintendo\"
"C:\Emulators\Mala\layouts\SuperVision\"
"C:\Emulators\Mala\layouts\Vectrex\"
"C:\Emulators\Mala\layouts\Virtualboy\"
"C:\Emulators\Mala\layouts\Visual Pinball\"
Create the folders where all the emulator install files will be stored:
"C:\Emulators\InstallFiles\"
"C:\Emulators\InstallFiles\atari800WinPlus\"
"C:\Emulators\InstallFiles\chankast\"
"C:\Emulators\InstallFiles\daphne\"
"C:\Emulators\InstallFiles\fceUltra\"
"C:\Emulators\InstallFiles\freedo\"
"C:\Emulators\InstallFiles\fusion\"
"C:\Emulators\InstallFiles\futurePinball\"
"C:\Emulators\InstallFiles\handy\"
"C:\Emulators\InstallFiles\jum52\"
"C:\Emulators\InstallFiles\mame\"
"C:\Emulators\InstallFiles\mess\"
"C:\Emulators\InstallFiles\neoPop\"
"C:\Emulators\InstallFiles\nostalgia\"
"C:\Emulators\InstallFiles\o2em\"
"C:\Emulators\InstallFiles\project64\"
"C:\Emulators\InstallFiles\realityBoy\"
"C:\Emulators\InstallFiles\scummVm\"
"C:\Emulators\InstallFiles\stella\"
"C:\Emulators\InstallFiles\virtualJaguar\"
"C:\Emulators\InstallFiles\visualBoyAdvance\"
"C:\Emulators\InstallFiles\visualPinball\"
"C:\Emulators\InstallFiles\visualPinball\roms\"
"C:\Emulators\InstallFiles\visualPinball\samples\"
"C:\Emulators\InstallFiles\winuae\"
"C:\Emulators\InstallFiles\z26\"
"C:\Emulators\InstallFiles\zsNes\"
Create the folders where all the emulators will be installed into:
"C:\Emulators\Programs\"
"C:\Emulators\Programs\atari800WinPlus\"
"C:\Emulators\Programs\chankast\"
"C:\Emulators\Programs\daphne\"
"C:\Emulators\Programs\fceUltra\"
"C:\Emulators\Programs\freedo\"
"C:\Emulators\Programs\fusion\"
"C:\Emulators\Programs\futurePinball\"
"C:\Emulators\Programs\handy\"
"C:\Emulators\Programs\jum52\"
"C:\Emulators\Programs\mame\"
"C:\Emulators\Programs\mame\snaps\" <--- Make sure you do this one
"C:\Emulators\Programs\mess\"
"C:\Emulators\Programs\neoPop\"
"C:\Emulators\Programs\nostalgia\"
"C:\Emulators\Programs\o2em\"
"C:\Emulators\Programs\project64\"
"C:\Emulators\Programs\realityBoy\"
"C:\Emulators\Programs\scummVm\"
"C:\Emulators\Programs\stella\"
"C:\Emulators\Programs\virtualJaguar\"
"C:\Emulators\Programs\visualBoyAdvance\"
"C:\Emulators\Programs\winuae\"
"C:\Emulators\Programs\z26\"
"C:\Emulators\Programs\zsNes\"
Create the folders where all the Non-Mame emulator games will be stored:
"C:\Emulators\RomFiles\"
"C:\Emulators\RomFiles\3DO\"
"C:\Emulators\RomFiles\AdventureVision\"
"C:\Emulators\RomFiles\Arcadia\"
"C:\Emulators\RomFiles\Astrocade\"
"C:\Emulators\RomFiles\Atari2600\"
"C:\Emulators\RomFiles\Atari5200\"
"C:\Emulators\RomFiles\Atari7800\"
"C:\Emulators\RomFiles\Atari800XL\"
"C:\Emulators\RomFiles\AtariJaguar\"
"C:\Emulators\RomFiles\AtariLynx\"
"C:\Emulators\RomFiles\ChannelF\"
"C:\Emulators\RomFiles\Colecovision\"
"C:\Emulators\RomFiles\CommodoreAmiga\"
"C:\Emulators\RomFiles\Daphne\"
"C:\Emulators\RomFiles\Gameboy\"
"C:\Emulators\RomFiles\GameboyColor\"
"C:\Emulators\RomFiles\GameboyAdvance\"
"C:\Emulators\RomFiles\Intellivision\"
"C:\Emulators\RomFiles\NeoGeoPocketColor\"
"C:\Emulators\RomFiles\NeoGeoPocketMono\"
"C:\Emulators\RomFiles\Nintendo\"
"C:\Emulators\RomFiles\Nintendo64\"
"C:\Emulators\RomFiles\Odyssey2\"
"C:\Emulators\RomFiles\PassigarScumm\"
"C:\Emulators\RomFiles\Sega32x\"
"C:\Emulators\RomFiles\SegaCD\"
"C:\Emulators\RomFiles\SegaDreamcast\"
"C:\Emulators\RomFiles\SegaGamegear\"
"C:\Emulators\RomFiles\SegaGenesis\"
"C:\Emulators\RomFiles\SegaMasterSystem\"
"C:\Emulators\RomFiles\SegaSC3000\"
"C:\Emulators\RomFiles\SegaSG1000\"
"C:\Emulators\RomFiles\SuperNintendo\"
"C:\Emulators\RomFiles\SuperVision\"
"C:\Emulators\RomFiles\Vectrex\"
"C:\Emulators\RomFiles\Virtualboy\"
Create the folders where all the Non-Mame emulator screenshots will be stored:
"C:\Emulators\Snaps\"
"C:\Emulators\Snaps\3DO\"
"C:\Emulators\Snaps\Adventure Vision\"
"C:\Emulators\Snaps\Arcadia\"
"C:\Emulators\Snaps\Astrocade\"
"C:\Emulators\Snaps\Atari2600\"
"C:\Emulators\Snaps\Atari5200\"
"C:\Emulators\Snaps\Atari7800\"
"C:\Emulators\Snaps\Atari800XL\"
"C:\Emulators\Snaps\AtariJaguar\"
"C:\Emulators\Snaps\AtariLynx\"
"C:\Emulators\Snaps\ChannelF\"
"C:\Emulators\Snaps\Colecovision\"
"C:\Emulators\Snaps\CommodoreAmiga\"
"C:\Emulators\Snaps\Daphne\"
"C:\Emulators\Snaps\Future Pinball\"
"C:\Emulators\Snaps\Gameboy\"
"C:\Emulators\Snaps\GameboyColor\"
"C:\Emulators\Snaps\GameboyAdvance\"
"C:\Emulators\Snaps\Intellivision\"
"C:\Emulators\Snaps\NeoGeoPocketColor\"
"C:\Emulators\Snaps\NeoGeoPocketMono\"
"C:\Emulators\Snaps\Nintendo\"
"C:\Emulators\Snaps\Nintendo64\"
"C:\Emulators\Snaps\Odyssey2\"
"C:\Emulators\Snaps\PassigarScumm\"
"C:\Emulators\Snaps\Sega32x\"
"C:\Emulators\Snaps\SegaCD\"
"C:\Emulators\Snaps\SegaDreamcast\"
"C:\Emulators\Snaps\SegaGamegear\"
"C:\Emulators\Snaps\SegaGenesis\"
"C:\Emulators\Snaps\SegaMasterSystem\"
"C:\Emulators\Snaps\SegaSC3000\"
"C:\Emulators\Snaps\SegaSG1000\"
"C:\Emulators\Snaps\SuperNintendo\"
"C:\Emulators\Snaps\SuperVision\"
"C:\Emulators\Snaps\Vetrex\"
"C:\Emulators\Snaps\Virtualboy\"
"C:\Emulators\Snaps\VisualPinball\"
I have saved all of these empty folders and I will upload them to save anyone time if they too are setting Mala up from scratch following UncleT’s guide.
Extract the .zip and place everything in the “C” folder to your C:\ drive or wherever you wish. You can delete any of the folders if you wish but I’m going to keep them all for future use even though I am not going to use all of the emulators at present.
Hope this saves someone some time.