Ok, for the relay board. I bought mine from Hobby Engineering.
http://www.hobbyengineering.com/SectionEK.html#IX1268They were a couple dollars more than the place listed in the readme file but had more shipping options than just UPS ground. They also have it in Kit, Assembled and in an alternate assembled configuration with a case. All are listed on that page. If you decide to use the relay board as I did, you will need either a straight through DB25 M-F cable or you can contruct one yourself. If you make one yourself, you only need to connect pins 2 through 9 on both ends. pin 2 to 2, pin 3 to 3, etc. You will need to supply the relay board with +12VDC. Either through a universal power adapter or as I did by using the +12VDC already available in my cab. There are connections for both types of hookups on the relay board. Connecting the Relay Board to the GP-Wiz49 is exactly like connecting regular arcade buttons. You use a common ground running from the GPWiz49 to the relay board terminals marked with a C (Common). Then wire the Mode Switch on the GP-Wiz49 to Relay #1 NO (Normally Open) terminal. Then wire each of the mode buttons in the same manner to relays #2-8. You will end up with 1 mode left over that does not go to a relay! On my setup that mode is 16 Way. I chose to leave it out because it was a last minute mode that Randy through in at someone's request to try to make 720 (I think it was 720) to be more playable. It's not based on a real arcade control (although it might be usable on a Colecovision emulator??).
You can also choose to leave other modes out but the batch files assume that the modes are in the order specified on the sheet that comes with the GP-Wiz49 and that relay 3 is 8 way mode. If you leave out another mode, say 49 way progressive, you will have to either skip relay #2 (easiest) or move things around in the batch file so the modes line up with the relays you wired to. It goes right on up the line from Mode 1 on Relay #2 to Mode 7 on Relay #8.
I think most of the questions with the instructions in the file are due to not having a GP-Wiz49 in front of you. If you were to read the instructions while holding the GPWiz49, you would see how the board is marked and the rather cryptic looking Upper B, etc would actually make sense

Hopefully, soon, someone with some graphics ability will step up and make some better diagrams than I can. It would also be cool if someone that can program would create a better program than a DOS program with a batch file shell. There are a lot of possibilities for other things as the parallel port is also capable of feeding information back to the computer as well. The programs in the .zip are strictly output to only the data bits though so it would have to be written with more capabilities in mind. During my research I ran across hundreds and hundreds of pages of programming examples, DLLs to work with XP, and lots of sample applications but only this DOS one was capable of taking input on the commandline and setting bits on the parallel port. Everything else assumed you wanted a windows interface to do the switching. As long as an FE author or anyone else who might come up with a better solution gives the ability to set the mode via commandline, most FE's should be able to support automatic switching using the info in controls.ini.
I hope this helps clear things up a bit and doesn't overwhelm anyone.
Toonces