Here's a few to start the list.. I'm not including games that used mechanical and optical rotary sticks since these sticks were used in MANY games and I don't consider them to be extremely specialized.
Berzerk.. 9-position optical but later converted to a Wico 8-way leafswitch stick.
Moonwar.. GIANT optical roller controller similar to the Major Havok controller but three times the size.
I-Robot.. hall effect stick
Escape From The Planet Of The Robot Monsters.. hall effect stick
Xybots.. special 8-way twist to turn sticks.
Quarterback.. Leland spring action potentiometer sticks.
John Elways Team Quarterback.. Leland spring action pot sticks,
All American Football.. Leland spring action pot sticks.
Strike Zone.. Leland spring action pot sticks.
Paperboy.. special handlebar controller (optical or pot based ?)
Steel Talons.. Analog trigger stick with buttons and a rudder pedal.
Sinistar.. Williams 49-way optical balltop stick
Gauntlet Dark Legacy.. Happ 49-way optical bat style stick.
Gorf..analog trigger stick (can be played with a regular digital 8-way without great difficulty)
Major Havok.. optical roller controller (basically a spinner mounted sideways)
720.. special balltop joystick that is either optical or pot controlled but uses some sort of drive chain to transfer the joystick movements to the encoder)
Lunar Lander.. pot based throttle lever.
Food Fight.. analog balltop stick.
Title fight..twist to turn sticks similar to Xybots sticks but with different style hand grips.
Frontline.. 8-position mechanical rotary dial with built in push down fire button.
Tin Star.. same as Frontline controller.
Wild Western.. same as Frontline controller.
I'm sure there's many more I can't think of at the moment.
