My first cab initially had what you're explaining...intake port low, exhaust fan up high. I'm not running a fast pc by any means, and using an LCD, so limited heat there. That said, I found the inside of the cabinet to still be way too warm. Swapped them around, intake fan low, exhaust port around your B area, and things run much better.
Incidentally, I use HVAC intake vents, painted black for my exhaust port...find a smaller one and it doesn't look too bad.