Normally when I build my bartops I use a standard 60-1 wire harness but I decided to go a different route.  This time I had a friend build one for me with only the wires I need.  I use two buttons, one joystick, player 1 and player 2 plus the speaker wires.  Everything else I don't need.  So he built one for me with only those wires.  He kept pin#28 for the ground so I could use it.  
I use a computer power supply because it comes with the required plug and play connector that hooks up to the board.  I don't have to worry about hooking it up to a standard power supply.  Now, I'm coming across where the buttons and joystick don't work.  The game powers on and I see the image on the screen but none of the buttons or joystick are working.  
My question is do I need all those wires on the standard wire harness in order for the buttons and joystick to work even though I am not using all them?  Or maybe I missed a grounding wire somewhere?  Can anyone help or provide suggestions?? I already tried to remove the ground wire from the harness on position #28 and grounding it directly to metal (power supply) but still no luck.  Any ideas??
Thanks in advance.