I've read just about every post on the subject, but I'm still not sure how this goes.
I have a Happ Trackball with red circuit boards. The two circuit boards have a Molex 4-pin plug on both boards. The wires are then connected to a single 6-pin Molex plug. I can't say for sure, but I think I can see a 1 for the first pin on the board, and the layout is:
Board 1:
1. Yellow
2. Red
3. Black
4. Green
Board 2:
1. Purple
2. Red
3. Black
4. Blue
If I understand the diagrams correctly, I have to splice into each of the boards separately. Is that correct? so both boards are connected, independently, to the Mini-Pac? I can't use the 6-pin Molex?
The boards can share 5v wires and ground wires or you can run separate wires for each -- both ways work as long as both boards get 5v and ground.
You can make a molex to .1" harness if you don't want to hack the trackball and minipac harnesses.
The easiest way is to cut off the molex and minipac connectors and use a euro-style terminal strip to connect the wires.

The red wires are 5v.
The black wires are ground.
Yellow and green are data lines.
Blue and purple are data lines.
If an axis is moving backward to what you expect, swap the green and yellow, blue and purple, or brown and orange data lines as needed.
Also, there's a giant ground wire on the Happ. Can I connect that to the MiniPac's ground (Pin 1 [of J1])? or do I have to find a different ground?
Connect the big green ground wire to frame ground/power supply case to bleed off the static electricity generated by spinning the trackball.
Scott