Yes, my issue is with MKKE lowering to MA's set resolution, MA is fine when returning.
I am honestly new to using AHK so I don't have a solid grasp on that aspect as of yet. 
If you can assist with a proper AHK for my use it would be greatly appreciated. 
Thank You,
Jason
Well, since it's just rearranging the above.....
cD = 32 ; bits (quality) - you can change to suit your requirments
sW = 1920 ; pixels - you can change to suit your requirments
sH = 1080 ; pixels - you can change to suit your requirments
rR = 60 ; Hz (frequency) - you can change to suit your requirments
ChangeDisplaySettings( cD, sW, sH, rR )
sleep, 500
Run, MKK.exe
ExitAPP
Return
ChangeDisplaySettings( cD, sW, sH, rR ) {
VarSetCapacity(dM,156,0), NumPut(156,dM,36)
DllCall( "EnumDisplaySettingsA", UInt,0, UInt,-1, UInt,&dM ), NumPut(0x5c0000,dM,40)
NumPut(cD,dM,104), NumPut(sW,dM,108), NumPut(sH,dM,112), NumPut(rR,dM,120)
Return DllCall( "ChangeDisplaySettingsA", UInt,&dM, UInt,0 )
}
This would change the desktop resolution before launching MKK.
At work, so I don't know what the .exe for it looks like.
Copy and paste the above into notepad.
Change MKK.exe to whatever it should be.
Change the numbers on the first part to whatever your settings in MKK are.
Save it as "all file types" with the extension .ahk
Put it in the same folder as MKK.exe
Install autohotkey if you haven't already.
Change your desktop resolution to something different, then click on the ahk script to see if it works.
The sleep line will make the script wait for half a second so the computer has time to change the resolution before the game launches.
It might not be necessary. You can try deleting it or making the time shorter (why wait longer than you have to?)
If it seems to work ok, right click on the ahk script and you should now have an option to compile the script to a .exe
Point Maximus Arcade at that .exe instead of the original one.
I haven't used Maximus Arcade, so I don't know if it will change the resolution back or not.
You might be stuck at the higher resolution when it goes back to Maximus.
If that happens, this script is going to get much more complicated.
EDIT: There is probably a better solution out there dealing with MKK itself or your video card software.