I ended up figuring this out myself. First, you want to load a rom called "Test Controls.bin" It will show you all of the controls and change when the controls are activated.
You can see a video of the rom working here:
In mess, the mappings are weird. Hit Tab to get the contoller mappings. Here is what I figured out (using Mess UI 0.13)
P1Start - 1
P1 Up
P1 Down
P1 Left
P1 Right
P1 Button 1 - P2 Out ring (pull)
P1 Button 2 - P2 In ring (push)
P1 Button 3 - P2 twist right
P1 Button 4 - P2 twist left
P1 Button 5 - 2
P1 Button 6 - 3
P1 Button 7 - 4
P2 Up
P2 Down
P2 Left
P2 Right
P2 Button 1 - P1 Out ring (pull)
P2 Button 2 - P1 In ring (push)
P2 Button 3 - P1 twist right
P2 Button 4 - P1 twist left
Or, using the test controllers rom, here are the mess mappings:

Hope that helps!