One thing I was curious about was the inclusion of a DVD drive. These days, USB thumb drives can hold more and cost less. Seems to me you could've used less space by just putting a USB port on the back. Thoughts?
Yep. Great feedback. USB ports on the back WILL HAPPEN, I just could not easily find a double port slot-cover cabled for the header pins (well, they exist, I know, but I was unable to get the item at my local micro center). Eventually, I will just grab one on my next newegg order or something. I have plenty of room on my copper backplate for this and I planned for it anyway.
As for the DVD drive--the internal sizing was completely based on the LCD framing I constructed. In fact, everything was in pieces until I had the screen mounted and I could start measuring everything based on that. The result, as I expected, left me with plenty of internal real estate to throw in the DVD burner. That thing was so cheap anyway, it allowed me to easily install my OS, and I figured, a DVD burner in a PC running XP might come in handy once in a while since I am basically a Mac household. SO, three answers--software (OS) load simplicity, plenty of room for it, and CHEAP part! At this point now, it will probably go unused for a long time since I pretty much do everything over WiFi. I even configure my FE now using VNC because I have my mouse cursor hidden. All file manipulation happens remotely as well.
A few questions:
Any further details on the latching mechanisms?
What make/model of wireless keyboard/mouse are you using?
Ahh, the AppleII - many good memories 
What emulator have you found to be best for this?
I guess I am not surprised you are asking about the latch mechanisms. It's probably the one detail in the design that cost me the most time both from a planning perspective and execution. The answer is surprisingly simple. I ended up using 6 spring latches (I will post images in a few minutes) as follows: One latch holds the left vertical panel (P3), another for the right (P4), two more for the horizontal panel (P1, P2), and the last two hold the screen. It's setup in a kind of 'cascade' of doors. As you can see in the video, you have to open the screen first, since it sits on top of the CPs with rubber feet (this is where the gap is that I described above). The screen serves as the lid for the computer framing and gets you access to the latches for the vertical panels and finally the horizontal. Hopefully the images will show you. I must say that the screen latch mechanism is pretty ingenious ;-)
The wireless keyboard/mouse is a BTC model 9116URF. I spotted this some time ago, but it's a discontinued model. That makes it REALLY scarce these days, however, you might still be able to get one where I did at partspc.com. That outfit gets really mixed reviews, but for $30 and free shipping, I couldn't go wrong. It arrived within days and I really think it's perfect for this. It would have been cool to find a bluetooth one, but this thing is just what I wanted--small, cheap, and has the mouse-stick. Of course, I took the receiver apart and just wrapped it with it's own cord and bolted it onto my HDD. Getting the plastic bits off of it saved a little room inside. So far, reception is great, no interference with WiFi or anything else that I can tell, and the range is several meters. I like the keyboard--too bad it won't get used much! Oh, and a function key switches the mouse to joystick mode--probably analog. I don't use it that way.
I am using MESS to emulate the Apple //e Enhanced (apple2ee). This is the computer I grew up with and seems to work fine so far. I have not had to do anything fancy YET. One issue I am running into with MESS is that the key mapping is specific to each MACHINE, not to each software file. In other words, if I map keys for Lode Runner for instance, the whole machine changes and now Crisis Mountain does not work right. I posted a question on the MESS forum, but so far the answer is to add a ctrlr file to my FE comand line. I might have to do that for each game. There are hundreds, but I will probably only setup a handful when it's all said and done. Some of the Apple II stuff we played was only because we didn't have an arcade machine!