So with the cut holes in the wood, you then put the wood on top of the plexi/lexan, traced it, then used your router?
My router skills are lacking, as far as cutting circles and patterns. I'm hoping to stick with the forstner bit. I wonder if do the wood, like you did, then put it on top, and then use it as a 'guide' for the Lexan, if that would make cleaner cuts. I still have some scrap to mess around with, I'm gonna try that from the top and bottom, see if going in or out is causing the jagginess.