First thing, don't jump stuff on the circuit boards if you're not sure what the cause of the problem is. That part burned up for a reason and you just gave the overload a new path to follow to do even more damage.
First guess is a bad solenoid in the flipper circuit. Test those out for reasonable resistances to see if one is shorted out and drawing enough power to shut the game down (the reset you saw). If one is that bad then it's going to have a very different pair of resistances than the others of the same type.
Does that pin have diodes on the flipper coils? If so, check those too, making sure to lift one leg when you do it to get a proper test on it.