I'm probably a little late, but shouldn't someone have told him not to use Cat5, as it's outdated and will be a limiting factor? He should at the very least be doing permanent wiring with Cat5e, and I would always recommend Cat6 going forward.
Plus, if you're just doing straight through runs, such as router to jack, jack to jack, etc, the color scheme is irrelevant. It just has to be the same on both ends. They're just wires.