Ok, I think everything is fixed. I put numscreens back to one since I only want one screen using switchres my crt! right?
After I got the Monitors to display the proper things Marquee just displaying the marquee artwork, and the CRT just displaying HS and mame when engaged , I then had a problem with my CRT only displaying 640x480 all of my modes were gone, I then re-ran Vmmaker and got my 90 modes back. I then restarted, fired up HS and BOOM I had my modes back beautiful scanlines on my beautiful monitor . Hooray. the last item I have is audio stuttering on most games, I read another post about audio stuttering and I don't think I have multithreading enabled. I will check to see if it is enabled and hopefully that will solve that issue.