FCEUltraX not keeping video settings (nes emulator for Xbox)

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I'm at a lost here guys! I'm trying to get the best pic with the filters within the emulator settings but for some reason after I make changes to the video settings then go and play any game the default settings are applied. Is there a master config save somewhere? Do I need to delete the config save file and have FCEUltraX make another cause overwriting isn't working. My Xbox is soft modded the monster component cable so I can run the emulators in HD.

Thanks for your time

[ark_ader]

Check to see if the files are read only in FTP.

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Thank you for the reply
Are you talking about the config.ini file?

[ark_ader]

Thank you for the reply
Are you talking about the config.ini file?

I would check every file in the directory.  I had this problem once with CoinOPS.  Hope it helps. 

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Ark_ader,

I would like to thank you for you help with me on this but in the end I just deleted the game saves folder in my E drive and started all over. It worked and able to keep my video setting from switching to one game to another.