Just an update for those that might be experiencing CHD difficulties with a recent upgrade
I coulnd't figure out how to compile the tools after I had already compiled mame alone using Mr. Do's awesome guide. So I ended up recompiling 0146u5 again using the command "make all" and that made the chdman tool Howard mentioned earlier, as well as some others.
I looked up some info on chdman thinking I'd update the four CHD's I had issues with using the command line, but after looking at the list of the commands I chickened out and dowloaded the front end for chdman from progettosnaps and it was super intuitive. 37 minutes later on my slow arse family desktop and my CHD's were updated and kinst, kinst2, blitz99, and mace were all working.
As it turns out I found the rom I missed for rastan that was labeled rastan2 in the list where I get my updates. I'm sure there is a reason for this but the important thing is I found the rom and that game is working now.
I'm sure there is a similar issue with dynduke, I'll post back when I figure that one out.
Thanks again Howard for pointing me towards romcenter, I'm definately going to use that on my next upgrade!