Sorry for the little hiatus there, I got sick and didn't get to check until now. Using my radioshack meter I checked the voltages coming in and out at multiple spots. Most readings were good, some I didn't get any readings. These were the bad ones, both +5 vdc out of the PS to the Video PCB, both +5 vdc and one +12 vdc from the PS to the CPU PCB. I made a drawing of my findings if anyone wants to see what I'm talking about.
Scratch that, I didn't read the -5 and +5 right so really that power supply checks out 100% on the meter. Now I don't know what to check for as the only thing I can see wrong is something with one of the two PCBs and anything past a visual check and checking with a meter, I wouldn't know how to diagnose it.