I did do that already.  Do I have to do something in the game themselves?  There is also a spot in Controller mapping, under default options where there are drop downs and I choose Joystick for all options ADstick etc.  
Under controllers, the use Joystick is checked.  Here is the funny part.  On the same screen is digital joystick axes and a bunch of check boxes with the axes for the 360 controller.  I can check them all but when I click apply, they all clear themselves.  In some games, it actually kind of works but not for most.