IIRC, Off top of my head:
Atari Football (atarifb) [2 or 4]
Atari Soccer (soccer) [2 or 4]
Atari Basketball (not sure rom name)
Cabal (cabal)
Marble Madness (marble)
Rampart (rampart) [3]
Tehkan World Cup (tehkanwc)
Atari Arcade Classics (?rom name)
umm, there's an ice hockey game and a volleyball game. A track & field version, and a combat training school game.
Maybe attax.
All lightgun games since lightguns are very like trackballs.
I don't know if they "count", but the cocktail games of "1 trackball" games (centiped, milliped, missle command in cocktail mode).
I'll run a better check on mame .62 in a couple days if you want. I need to do some source editing I already have in my TODO list to get the data first, though.