Sweet! I'm glad I was able to help someone else for a change.
I've been running through the advmame tool ADVV to adjust all the resolutions and it has fixed the problam I was haveing with vertical games like PACMAN being too tall to fit the sreen, and with them being wavy. All this stiff gets fixed when following this guys directions at the above site, except I can not fix this one:
If I try to play Asteroids, Battle Zone, or those types I get an error when launching that says no setting for standard VGA 640 X 480. I crated a resolition of 640 X 480 in ADVV, but this does not work. Can anyone help with this?