If it held the pin for the jig you used to cut the circle, I don't get how it could be off.
something got off center and I couldn't cover the 90 degrees needed
Also don't quite follow what you mean by that.
Did you try drawing lines from the centers of the lazy susan bearing mounting holes?
I assume you're using this type:
and not this type:
The 2nd one isn't really designed to be used vertically. The weight will be resting on the stamped joint in the middle instead of the bearings.
It might make the turning harder for a servo.
Not sure if it's relevant, but also keep in mind that the VESA mounts on the back of a monitor are rarely centered.