It's a bit of effort potentially, but you could use Lirc (or WinLirc) to send the commands to turn on the TV and switch to a specific channel/input.
You will have to build/buy an IR blaster of some kind, but that's not really hard or expensive. The simple one I built is ~5 components which cost less than $10 from Radio Shack. I bet you can buy complete units on ebay for less.
As for the software, if you can use non-discrete commands (power toggle, channel up/down, etc.), you should be set pretty easily. If you need to have discrete commands (power on/off, channel 3, video 1, etc.), you may have to do some searching/testing. I was able to find the commands for my set after a bit of effort and this setup works fairly well. I'd be a lot happier if I could use a different method (hotel mode for instance), but it's not available.
On the up side, since I'm using WinLirc, I can turn on the TV when everything is running and I don't see the BIOS stuff.