Hey Shil, I am aware of you being relatively new to this, you did an amazing job so far already IMHO

Sorry if I came to harsh, that was not my intention at all, just trying to help

I just hope you didn't blow-up the new Cinelabs HTV

My guidance in getting my Amplifone running again was the Amplifone FAQ document. Although there are some flaws in it (f.i. Q2 and Q3 are mentioned wrong way around) it _is_ a good guide. However, I have been educated in electronics and it is my work so maybe I'm just a little more experienced. Whatever

OK first thing: Remove the BU406D, wether it measures ok or not (since you have some spares, I'd replace it anyway)
So for now, de-solder the BU406D from the PCB and remove it from the cooling plate.
The added diodes I'm talking about should be on the solder side of the PCB. Here's a pic that shows them:

You can see one exactly on the burnt spot, the other is to the right of it on he wide track. You can check these for shorts.
If these diodes are not there, you probably don't have a "real" SW HV-PCB, but it was used on another game. You definitely must add the diodes if they are not there. Same goes for the really big resistors R20 and R21.
These resistors are also "modded in" at the factory, but they are on the component side. One of these resistor caused that burn spot on my PCB. Here's a pic that shows them:

They are the big black things near the left voltage regulator and the other near the cooling body. They should measure around 50 Ohms. Here's a close-up of the bad one on my PCB:

This first picture
also shows that the left voltage regulator has the insulation. You can see the (top of the) thermal pad AND (VERY IMPORTANT) the insulator under the screw/bolt that's holding it. You could measure between the two screws on the regulators as one is electrically connected to the cooling body and the other not, so you should measure OPEN. If you measure a short, something's wrong with the insulation !!
Check again both voltage regulators on shorts. Sometimes you will have to de-solder (a leg of) a part to see what is causing the short. Sometimes parts are in parallel, so you can't tell which is shorting).
What color is your PCB ? If you have a blue one like me, the diode going from the HVTis near the HVT itself (I had to move it to the solder-side to allow the Cinelabs HVT to fit, as they point out in the installation instructions).
Here's a pic, but it's already moved there:

These are the main things to check. You should also check all the other diodes and transistors for shorts.
If all seems well, power up the board with the BU406D still _uninstalled_. Then you should check the output voltages of the regulators. They're not going to be exactly +24V and -24V. That is because of the resistors that are "bridging" these regulators partially. It should be around those values though....
If everything stays ok, reinstall the BU406D. NO insulation there, the metal back of the BU406D needs to make good contact with the cooling plate ! so turn the screw and nut pretty tight (not over-tight). I moved the screw to the outside to make this easier (nut on the inside).
Then hopefully you have already found the problem, and hopefully your HVT survived !