Where does the trackball plug into on the strata board? Does it go through the JAMMA connector, or does it have its own connector? I know on my Golden Tee 99, the trackball plugs into a seperate connector on the board, labeled player 1. If the strata board goes though the JAMMA connector then I bet that is your problem. I am not familar with the strata board though, maybe its the same.
woody