do you have a multi meter?
if so set it to DC 20, then stick the black probe on one of the grounds on the power supply.
then use the red probe to check the other voltages, 12, 5, -5
there is a dial on the power supply turning it wil increase or decrease the voltage levels.
dont over do it.. example running a 12 at 15 or something is probably not a good idea..
but say running 12 at 13 and still no change then it's probably not the voltage.
you're basically tweaking it 1 volt or so one way or the other.
for the board that comes up but is faulty.. couple of things.
1. have you tried taking up the roms that it says are bad and then putting them back down? they might just need to be reseated.
2. the other board you're taking roms off to fix the one with bad roms.. are the two boards using the same version of roms?
There was several revisions of MK, if you're say mixing v1 and v2 roms together i would imagine it's gonna call it a bad rom even though it might actually be good it's not the version of the rom it's expecting.. i assume it probably does this with some sort of CRC check, so if it's not exactly what it wants it's gonna say its bad.
beyond making sure the roms are the same version and resenting them.. i do not know.. it could be a million things, anything from a loose connection, to a blown resistor or anything.