I noticed my MPU had a little blue square button that didn't seem to do anything. Same as the little red button?
Are flippers controlled by the MPU at all? I removed my MPU to add a battery to it, I put it back and my flippers don't work. Bad timing on something else dying or could I have jacked something up on the MPU to cause this issue?
This is direct from the Misc. section of the M3M repair guide for your era pin:
# "My Bally game works fine except for the flippers. They do nothing. All fuses are Ok, as are the flipper EOS switches."
This is a very common problem. There is a relay on the solenoid driver board that turns on the flippers during a game. The power to this relay is through brown jumper wires between two header pins, adjacent to the relay. If one of the wires break, comes loose, or their solder points go cold, the flippers will no longer work. On the back side of the solenoid driver board, look for the two brown wires and resolder them to the connector header pins.
# "How do I reset the replay values and high scores?"
This can be done by pressing the red button on the MPU board when the game is powered on. Note this is the button on the MPU board, not the red (self-test) button inside the coin door!