I received the diodes and another flipper rebuild kit from pinballlife.com yesterday. The flipper rebuild kit was just the coil sleeve, the flipper arm holder thingy, leaf switch, and a new link assembly. Essentially all the moving parts. Rebuilt the last flipper and it's now working great, so now all three are fantastic. I can't get over how much they improved and how easy and cheap it was.
The really great progress was in the ramp and trough areas. I replaced the diode on the control room switch and it fixed the ball-dying-when-it-goes-up-the-ramp issue. That was huge because it took away from the gameplay before but now it's perfect. The other big score was on the trough firing too much issue. I checked all the diodes in the trough and they all looked fine. I then found the switch on the side where the kicker shoots a ball into the lane. That switch had a diode that was disconnected on one end! I resoldered that and it now seems to work fine. Interestingly, it took a few games to work out the kinks. I'm guessing the board logic tells the game to disregard that switch when it doesn't see it for 50 games. Now my only remaining issue is that the T-Rex won't eat the ball. He goes down on it (giggle) but doesn't swallow it (chuckle). I have a new post that is supposed to attach the jaw to a coil but I need to figure out how it all hooks up. At least all of the gameplay issues are resolved.