The easiest way to glue two pieces of ply together to get what you want is to glue and screw. Make sure you get a nice even coat of glue over the pieces you're going to join, place them together, line them up and then drive 3/4" wood screws into the two pieces to clamp everything together. Once the glue is dry, take the screws out, and the side the screws were on becomes the bottom of your top. If you are using G1S ply, make sure your good surface faces out for both pieces. And because the side with the screw holes is the bottom, you don't really have to fill the screw holes unless you want to.
That's how I would do it.