You definitely have sync issues.
As you suspected already, the biggest unknown is the Ultimate Mister VGA-SCART. The website itself warns that the cable is designed for use with Mister only. In particular I notice that RGB autoswitching (pin 16) is weird, relying on 1.6v via VGA pin 14 (which corresponds to vertical sync).
https://ultimatemister.com/product/rgb-scart-cable/What's wrong with this is that PCs do not output 1.6v via pin 14. RGB TVs require a RGB switching signal around 1.0-3.0v. PCs output more like 3.5v to 5.0v via pin 14. Also, when you enable CSYNC in CRT_emudriver, your PC will output *nothing* via VGA pin 14/Vertical sync, so the RGB switching (for your JVC, at least) will not work.
Your JVC will require a RGB switching signal from the VGA-SCART cable. If you want to hack the cable, easiest way to achieve this is taking 5v (via pin9 or via MOLEX from PC) and running that through a ~150-200R resistor to reduce voltage to ~2.0v, and running that into SCART pin 16 instead.
Regarding software setup, and if switching CSYNC on/off via VMMaker, you should regenerate and re-install the video modes. Otherwise it won't work right. Hopefully this will be good enough to enable the Retrotink unit to work, at least.
If the retrotink still doesn't work, then I suggest you try a GreenAntz VGA to RGB transcoder instead. GreenAntz has some advantages vs Retrotink, especially because you don't have to worry about sync, it handles that all for you.
With a GreenAntz, you won't even need a VGA-SCART cable for your component TV. GreenAntz connects your PC to (component) CRT-TV directly, using common/generic/cheap/easily available cables.
More on GreenAntz here:
http://forum.arcadecontrols.com/index.php/topic,164245.0.htmlYou can only get GreenAntz directly from me, but it will be cheaper than the advertised Retrotink price.
If you want/need, I could also make a bespoke VGA-SCART cable to you, that should work with your JVC setup. This would be "reasonably priced" - more expensive than your Mister VGA-SCART cable, but it will be custom-made for your needs and should work. PM me directly for any GreenAntz transcoder and/or VGA-SCART cable requests.
Note that I can't process any orders until April, as am traveling right now.
Good Luck!
Z.